This function plots the distribution of species across the study area.

spp.plot(x, species, ...)

# S3 method for RapData
spp.plot(
  x,
  species,
  prob.color.palette = "YlGnBu",
  pu.color.palette = c("#4D4D4D", "#00FF00", "#FFFF00", "#FF0000"),
  basemap = "none",
  alpha = ifelse(basemap == "none", 1, 0.7),
  grayscale = FALSE,
  main = NULL,
  force.reset = FALSE,
  ...
)

# S3 method for RapUnsolved
spp.plot(
  x,
  species,
  prob.color.palette = "YlGnBu",
  pu.color.palette = c("#4D4D4D", "#00FF00", "#FFFF00", "#FF0000"),
  basemap = "none",
  alpha = ifelse(basemap == "none", 1, 0.7),
  grayscale = FALSE,
  main = NULL,
  force.reset = FALSE,
  ...
)

# S3 method for RapSolved
spp.plot(
  x,
  species,
  y = 0,
  prob.color.palette = "YlGnBu",
  pu.color.palette = c("#4D4D4D", "#00FF00", "#FFFF00", "#FF0000"),
  basemap = "none",
  alpha = ifelse(basemap == "none", 1, 0.7),
  grayscale = FALSE,
  main = NULL,
  force.reset = FALSE,
  ...
)

Arguments

x

RapData(), RapUnsolved(), or RapSolved() object.

species

character name of species, or integer index for species.

...

not used.

prob.color.palette

character name of color palette to denote probability of occupancy of the species in planning units (see RColorBrewer::brewer.pal()). Defaults to "YlGnBu".

pu.color.palette

character name of colors or color palette (RColorBrewer::brewer.pal()) to indicate planning unit statuses. Defaults to c("grey30", "green", "black", "red") which indicate non selected, selected, locked in, and locked out (respectively).

basemap

character object indicating the type of basemap to use (see basemap()). Valid options include "none", "roadmap", "mobile", "satellite", "terrain", "hybrid", "mapmaker-roadmap", "mapmaker-hybrid". Defaults to "none".

alpha

numeric value to indicating the transparency level for plotting the planning units.

grayscale

logical should the basemap be gray-scaled?

main

character title for the plot. Defaults to NULL and a default title is used.

force.reset

logical if basemap data has been cached, should it be re-downloaded?

y

NULL integer 0 to return values for the best solution, integer value greater than 0 for y'th solution value.

Examples

# load RapSolved objects data(sim_ru, sim_rs) # plot first species in sim_ru spp.plot(sim_ru, species = 1)
# plot "bimodal" species in sim_rs spp.plot(sim_rs, species = "bimodal")